Index

Symbols

--force pydamage-analyze command line option --group pydamage-analyze command line option --minlen pydamage-analyze command line option --no_ga pydamage-analyze command line option --outdir pydamage command line option --plot pydamage-analyze command line option --process pydamage-analyze command line option --rescale pydamage-analyze command line option --show_al pydamage-analyze command line option --subsample pydamage-analyze command line option --threshold pydamage command line option --verbose pydamage-analyze command line option --version pydamage command line option

--wlen pydamage-analyze command line option -f pydamage-analyze command line option -g pydamage-analyze command line option -m pydamage-analyze command line option -n pydamage-analyze command line option -o pydamage command line option -p pydamage-analyze command line option -pl pydamage-analyze command line option -r pydamage-analyze command line option -s pydamage-analyze command line option, [1] -t pydamage command line option -vv pydamage-analyze command line option -w pydamage-analyze command line option

B

BAM pydamage-analyze command line option

C

CSV pydamage-filter command line option

M

module pydamage.main

P

pydamage command line option --outdir --threshold --version -o -t pydamage-analyze command line option --force --group --minlen --no_ga --plot --process --rescale --show_al --subsample --verbose --wlen -f -g -m -n -p -pl -r -s, [1] -vv -w BAM

pydamage-filter command line option CSV pydamage.main module pydamage_analyze() (in module pydamage.main)