Index

Symbols

--force pydamage-analyze command line option --group pydamage-analyze command line option --outdir pydamage command line option --plot pydamage-analyze command line option --process pydamage-analyze command line option --show_al pydamage-analyze command line option --threshold pydamage-filter command line option --verbose pydamage-analyze command line option --version pydamage command line option --wlen pydamage-analyze command line option

-f pydamage-analyze command line option -g pydamage-analyze command line option -o pydamage command line option -p pydamage-analyze command line option -pl pydamage-analyze command line option -s pydamage-analyze command line option -t pydamage-filter command line option -vv pydamage-analyze command line option -w pydamage-analyze command line option

B

BAM pydamage-analyze command line option

C

CSV pydamage-filter command line option

M

module pydamage.main

P

pydamage command line option --outdir --version -o pydamage-analyze command line option --force --group --plot --process --show_al --verbose --wlen -f -g -p -pl -s -vv -w BAM

pydamage-filter command line option --threshold -t CSV pydamage.main module pydamage_analyze() (in module pydamage.main)